with_AGI_gene
OMAT1P005460
<html><body><title>OMAT1P005460</title>(↑ Click "Links", if this line appears at the beginning.)<br><H1>Other supporting information</H1><table><tr><td colspan="2" align="left"><b>Gene Model</b><br></td></tr><tr><td NOWRAP width="75"></td><td NOWRAP><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u100054600000i/OMAT1P005460.gene_models.png" width="717"><br></td></tr><tr><td colspan=2 align="left"><b>Correlation Plot</b><br></td></tr><tr><td NOWRAP colspan="2" align="left"><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u100054600000i/OMAT1P005460.CorrPlot.jpg" width="800"><br><br></td></tr></table><hr><b>Expression profile (Values are plotted in Log(2) values.)</b><br><img src="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u100054600000i/OMAT1P005460.F0.Expression.png"><br><hr><b>Genes with related expresssion profiles.</b><br><table border=1><tr><th colspan=7 align="left">Positively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u400027050000i">OMAT4P002705</a></td><td>0.909407</td><td>-</td><td>AT4G11110</td><td>SPA2 (SPA1-RELATED 2)</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100060800000i">OMAT1P006080</a></td><td>0.907194</td><td>-</td><td>AT1G16680</td><td>DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100111400000i">OMAT1P011140</a></td><td>0.896596</td><td>-</td><td>AT1G31870</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u200078300000i">OMAT2P007830</a></td><td>0.894745</td><td>-</td><td>AT2G32295</td><td>FUNCTIONS IN: molecular_function unknown</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500204900000i">OMAT5P020490</a></td><td>0.889607</td><td>-</td><td>AT5G66010</td><td>RNA binding / nucleic acid binding / nucleotide binding</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100175500000i">OMAT1P017550</a></td><td>0.886842</td><td>-</td><td>AT1G64050</td><td>unknown protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100065400000i">OMAT1P006540</a></td><td>0.885297</td><td>-</td><td>AT1G17680</td><td>transcription factor-related</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100040150000i">OMAT1P004015</a></td><td>0.877568</td><td>-</td><td>AT1G11710</td><td>pentatricopeptide (PPR) repeat-containing protein</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u501160700000i">OMAT5P116070</a></td><td>0.871466</td><td>-</td><td>AT5G60100</td><td>APRR3 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 3)</td><td>AT5G60110</td><td>APUM18 (Arabidopsis Pumilio 18)</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u401080800000i">OMAT4P108080</a></td><td>0.870744</td><td>-</td><td>AT4G28910</td><td>LOCATED IN: cellular_component unknown</td><td>-</td><td>-</td></tr><tr><th colspan=7 align="left">Negatively Correlated Genes</th></tr><tr><th>Gens</th><th>PCC</th><th>Definition</th><th>Overlap gene</th><th>Definition</th><th>Overlap gene(antisense)</th><th>Definition</th></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100161000000i">OMAT1P016100</a></td><td>-0.888514</td><td>-</td><td>-</td><td>-</td><td>AT1G58290</td><td>HEMA1</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301101300000i">OMAT3P110130</a></td><td>-0.87537</td><td>-</td><td>-</td><td>-</td><td>AT3G45140</td><td>LOX2 (LIPOXYGENASE 2)</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u301132800000i">OMAT3P113280</a></td><td>-0.868149</td><td>-</td><td>AT3G54890</td><td>LHCA1</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100110100000i">OMAT1P011010</a></td><td>-0.856489</td><td>-</td><td>-</td><td>-</td><td>AT1G31330</td><td>PSAF (photosystem I subunit F)</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u100027400000i">OMAT1P002740</a></td><td>-0.851255</td><td>-</td><td>-</td><td>-</td><td>AT1G08380</td><td>PSAO (photosystem I subunit O)</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500057100000i">OMAT5P005710</a></td><td>-0.848048</td><td>-</td><td>-</td><td>-</td><td>AT5G16400</td><td>ATF2</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u500055600000i">OMAT5P005560</a></td><td>-0.843321</td><td>-</td><td>AT5G16030</td><td>unknown protein</td><td>AT5G16040</td><td>regulator of chromosome condensation (RCC1) family protein</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u201005200000i">OMAT2P100520</a></td><td>-0.842873</td><td>-</td><td>AT2G02500</td><td>ISPD</td><td>-</td><td>-</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300150900000i">OMAT3P015090</a></td><td>-0.838691</td><td>-</td><td>-</td><td>-</td><td>AT3G54890</td><td>LHCA1</td></tr><tr><td><a href="/db/SciNetS_ria227i/cria227s1ria00227u300058900000i">OMAT3P005890</a></td><td>-0.838269</td><td>-</td><td>-</td><td>-</td><td>AT3G16000</td><td>MFP1 (MAR BINDING FILAMENT-LIKE PROTEIN 1)</td></tr></table><br><a href="/dbfiles/SciNetS_ria227i/cria227s1i/cria227s1ria227u100054600000i/OMAT1P005460-correlation.txt">Get whole results</a><br><br> <HR><b>Over-Representation Analysis Result</b><br><br><table border="1"><tr bgcolor=#FF69B4><td></td><td><i>p</i>-value</td><td> <= 5.97e-17</td><td>:20 terms with high significance</td></a></tr><tr bgcolor=#FFFACD><td>5.97e-17 < </td><td><i>p</i>-value</td><td> <= 8.76e-06</td><td> :With considering multiple testing correction;<br><i>p</i> <= 1.00e-02 / 1142</td></tr><tr bgcolor=#FFFFFF><td>8.76e-06 < </td><td><i>p</i>-value</td><td> <= 1.00e-02</td><td></td></tr></table><br><table border="1"><tr><th>Type of term (*1)</th><th>Depth of the term in ontology tree</th><th>ID/Term</th><th>Description</th><th>Number of genes</th><th>Over-Representative rate (*2)</th><th><i>p</i>-value (*3)</th><th>PosMed <i>p</i>-value (*4)<br> (Link to PosMed)</th><th>Found on gene annotation</th></tr><tr bgcolor=#FFFFFF><td>B</td><td>5</td><td>GO:0090304</td><td>nucleic acid metabolic process</td><td>25/200</td><td>1.66</td><td>4.44e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFFFF><td>C</td><td>5</td><td>GO:0005634</td><td>nucleus</td><td>31/200</td><td>1.98</td><td>8.47e-05</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFACD><td>M</td><td>3</td><td>GO:0003676</td><td>nucleic acid binding</td><td>46/200</td><td>1.94</td><td>3.01e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0005515</td><td>protein binding</td><td>26/200</td><td>1.66</td><td>3.88e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0003723</td><td>RNA binding</td><td>14/200</td><td>2.02</td><td>4.39e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>4</td><td>GO:0003677</td><td>DNA binding</td><td>23/200</td><td>1.66</td><td>6.11e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>M</td><td>3</td><td>GO:0000166</td><td>nucleotide binding</td><td>22/200</td><td>1.67</td><td>6.83e-03</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0009047</td><td>stem</td><td>150/200</td><td>1.78</td><td>8.12e-22</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0000230</td><td>inflorescence meristem</td><td>142/200</td><td>1.83</td><td>6.49e-21</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0009013</td><td>meristem</td><td>143/200</td><td>1.78</td><td>6.22e-20</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0009052</td><td>pedicel</td><td>140/200</td><td>1.72</td><td>1.09e-17</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0009028</td><td>microsporophyll</td><td>142/200</td><td>1.69</td><td>2.09e-17</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>5</td><td>PO:0009027</td><td>megasporophyll</td><td>142/200</td><td>1.69</td><td>2.37e-17</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>4</td><td>PO:0020030</td><td>cotyledon</td><td>131/200</td><td>1.78</td><td>3.56e-17</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0000084</td><td>sperm cell</td><td>81/200</td><td>2.50</td><td>5.43e-17</td><td>-</td><td>no</td></tr><tr bgcolor=#FF69B4><td>PS</td><td>3</td><td>PO:0020097</td><td>generative cell</td><td>81/200</td><td>2.50</td><td>5.43e-17</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0000013</td><td>cauline leaf</td><td>134/200</td><td>1.73</td><td>1.14e-16</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0020039</td><td>leaf lamina</td><td>139/200</td><td>1.69</td><td>1.49e-16</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0000037</td><td>shoot apex</td><td>142/200</td><td>1.65</td><td>2.92e-16</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0009026</td><td>sporophyll</td><td>145/200</td><td>1.61</td><td>7.75e-16</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009005</td><td>root</td><td>144/200</td><td>1.60</td><td>2.51e-15</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009031</td><td>sepal</td><td>146/200</td><td>1.58</td><td>3.39e-15</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0008037</td><td>seedling</td><td>142/200</td><td>1.61</td><td>3.78e-15</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0009025</td><td>leaf</td><td>145/200</td><td>1.58</td><td>6.94e-15</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0009009</td><td>embryo</td><td>149/200</td><td>1.54</td><td>1.05e-14</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009010</td><td>seed</td><td>150/200</td><td>1.53</td><td>1.19e-14</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0009001</td><td>fruit</td><td>150/200</td><td>1.53</td><td>2.07e-14</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0006342</td><td>infructescence</td><td>150/200</td><td>1.53</td><td>2.07e-14</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0020091</td><td>male gametophyte</td><td>135/200</td><td>1.63</td><td>2.80e-14</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009032</td><td>petal</td><td>139/200</td><td>1.59</td><td>5.77e-14</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0008034</td><td>leaf whorl</td><td>145/200</td><td>1.54</td><td>8.70e-14</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0008033</td><td>phyllome whorl</td><td>145/200</td><td>1.54</td><td>8.70e-14</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0009049</td><td>inflorescence</td><td>151/200</td><td>1.44</td><td>4.14e-12</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0009046</td><td>flower</td><td>150/200</td><td>1.44</td><td>6.58e-12</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0006001</td><td>phyllome</td><td>148/200</td><td>1.44</td><td>1.30e-11</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>5</td><td>PO:0020038</td><td>petiole</td><td>122/200</td><td>1.60</td><td>1.49e-11</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>3</td><td>PO:0009006</td><td>shoot</td><td>152/200</td><td>1.40</td><td>5.67e-11</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PS</td><td>4</td><td>PO:0006345</td><td>pollen tube</td><td>54/200</td><td>1.85</td><td>1.48e-06</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FF69B4><td>PG</td><td>5</td><td>PO:0001078</td><td>E expanded cotyledon stage</td><td>145/200</td><td>1.75</td><td>1.42e-19</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>5</td><td>PO:0004507</td><td>D bilateral stage</td><td>144/200</td><td>1.75</td><td>2.37e-19</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>5</td><td>PO:0001185</td><td>C globular stage</td><td>142/200</td><td>1.73</td><td>2.18e-18</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>5</td><td>PO:0001081</td><td>F mature embryo stage</td><td>139/200</td><td>1.75</td><td>4.18e-18</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>4</td><td>PO:0007631</td><td>embryo development stages</td><td>149/200</td><td>1.65</td><td>5.37e-18</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>3</td><td>PO:0001170</td><td>seed development stages</td><td>149/200</td><td>1.65</td><td>8.66e-18</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>4</td><td>PO:0001054</td><td>4 leaf senescence stage</td><td>135/200</td><td>1.76</td><td>2.20e-17</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>3</td><td>PO:0001050</td><td>leaf development stages</td><td>135/200</td><td>1.75</td><td>2.32e-17</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>5</td><td>PO:0007133</td><td>leaf production</td><td>142/200</td><td>1.69</td><td>2.89e-17</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>4</td><td>PO:0007112</td><td>1 main shoot growth</td><td>142/200</td><td>1.69</td><td>2.96e-17</td><td>-</td><td>yes</td></tr><tr bgcolor=#FF69B4><td>PG</td><td>3</td><td>PO:0007134</td><td>A vegetative growth</td><td>142/200</td><td>1.68</td><td>5.97e-17</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>5</td><td>PO:0007604</td><td>corolla developmental stages</td><td>149/200</td><td>1.51</td><td>9.75e-14</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>4</td><td>PO:0007600</td><td>3 floral organ development stages</td><td>151/200</td><td>1.48</td><td>2.63e-13</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>4</td><td>PO:0007616</td><td>4 anthesis</td><td>146/200</td><td>1.51</td><td>4.56e-13</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>3</td><td>PO:0007615</td><td>flower development stages</td><td>151/200</td><td>1.44</td><td>4.46e-12</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFACD><td>PG</td><td>5</td><td>PO:0007605</td><td>androecium developmental stages</td><td>62/200</td><td>2.12</td><td>1.12e-09</td><td>-</td><td>no</td></tr><tr bgcolor="#555555" height="10"><td colspan="9"></td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>nucleic</td><td>-</td><td>22/200</td><td>3.37</td><td>1.92e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>nuclear</td><td>-</td><td>14/200</td><td>4.56</td><td>5.58e-07</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFACD><td>KW</td><td>0</td><td>recognition</td><td>-</td><td>11/200</td><td>5.00</td><td>2.53e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>motif</td><td>-</td><td>16/200</td><td>3.29</td><td>8.86e-06</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>cellular_component</td><td>-</td><td>73/200</td><td>1.50</td><td>4.45e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>finger</td><td>-</td><td>22/200</td><td>2.38</td><td>5.71e-05</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>containing</td><td>-</td><td>30/200</td><td>1.80</td><td>5.86e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>ubiquitin</td><td>-</td><td>12/200</td><td>2.67</td><td>6.36e-04</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>nucleus</td><td>-</td><td>24/200</td><td>1.86</td><td>1.18e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>nucleotide</td><td>-</td><td>13/200</td><td>2.04</td><td>5.02e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>region</td><td>-</td><td>24/200</td><td>1.66</td><td>5.24e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>biological_process</td><td>-</td><td>75/200</td><td>1.25</td><td>8.35e-03</td><td>-</td><td>yes</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>factor</td><td>-</td><td>27/200</td><td>1.54</td><td>9.02e-03</td><td>-</td><td>no</td></tr><tr bgcolor=#FFFFFF><td>KW</td><td>0</td><td>terminal</td><td>-</td><td>29/200</td><td>1.50</td><td>9.96e-03</td><td>-</td><td>no</td></tr></table><table><tr><td valign=top>(*1)</td><td>[B]:Biological process(Gene ontology), [C]:Cellular component(Gene ontology), [M]:Molecular function(Gene ontology), [PS]:Plant Structure(Plant ontology), [PG]:Growth and developmental stages(Plant ontology), [KW]:words found in gene description.</td></tr><tr><td valign=top>(*2)</td><td>([# of genes with the term] / [# of sampling (200)]) / ([# of genes with the term among whole genes] / [# of whole genes]) </td></tr><tr><td valign=top>(*3)</td><td>P-values were calculated on hypergeometric distribution in which we found <i>n</i> genes with a annotation term during 200 highly correlated genes, while we had <i>N</i> genes with the term in the whole genes.</td></tr><tr><td valign=top>(*4)</td><td><a href="http://omicspace.riken.jp/PosMed-plus/">PosMed</a> is a system which serve a p-values showing a relationship between the gene and the annotation term based on literature information and Gene-Gene interaction suchas co-expression or protein-protein interactions.</td></tr></table><hr><a href="/db/SciNetS_ria227i/cria227s904i">Top Page</a></body></html>
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